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Neisseria Genomic Surveillance

Comprehensive genomic analysis pipeline for N. gonorrhoeae and N. meningitidis (meningococcus) - AMR detection, outbreak investigation, and public health surveillance

📤 Submit Samples for Analysis

Upload your sequencing data for comprehensive genomic surveillance

🦠 Select Organism

N. gonorrhoeae Analysis Includes:

Antimicrobial resistance profiling (chromosomal mutations + HGT/plasmid genes)
NG-MAST and NG-STAR typing for strain characterization
FC428 clone detection (internationally spreading XDR strain)
Phylogenetic analysis and outbreak clustering
Clinical treatment recommendations

N. meningitidis (Meningococcus) Analysis Includes:

Complete serotype characterization (Serogroup:PorA:FetA)
Vaccine coverage assessment (MenACWY and MenB)
Rifampicin resistance detection for prophylaxis guidance
MLST and clonal complex assignment
Phylogenetic analysis for outbreak investigation
Public health priority classification and contact tracing guidance

Sample ID/Name

Email Address

Sequencing Reads (FASTQ)

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Click to select or drag FASTQ files

Paired-end reads (.fastq.gz)

Analysis Options

MASH Screening (Recommended) Phylogenetic Analysis AMR Profiling

🔍 Check Job Status

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🔬 Pipeline Information

Select organism to view pipeline documentation

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📊 Example Clinical Reports

View sample analysis outputs

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